MRIQC: individual T1w report

Summary

Subject ID: 025_ExercisePre.
Date and time: 2018-05-07, 00:06.
MRIQC version: 0.10.4.
Workflow details:
- Detected a zero-filled frame, has the original image been rotated?

Visual reports

Zoomed-in (brain mask)

Background noise

Extracted Image Quality Metrics (IQMs)

cjv			0.3002607098263379
cnr			4.24350230777127
efc			0.611961906310506
fber			78.53665161132812
fwhm	avg		4.146066666666667
fwhm	x		3.90371
fwhm	y		4.39761
fwhm	z		4.13688
icvs	csf		0.20536384961407023
icvs	gm		0.461455374698419
icvs	wm		0.33318077568751076
inu	med		1.0123718976974487
inu	range		0.32248190641403185
qi	1		0.0
qi	2		0.0008942998312311452
rpve	csf		21.631700025560953
rpve	gm		10.645753975292214
rpve	wm		16.82102509182126
size	x		180
size	y		256
size	z		256
snr	csf		2.6319340760429273
snr	gm		10.614555203544892
snr	total		10.140542546448044
snr	wm		17.17513835975631
snrd	csf		11.13277027483673
snrd	gm		23.657063155692867
snrd	total		24.02550110577927
snrd	wm		37.28666988680821
spacing	x		1.0
spacing	y		1.0
spacing	z		1.0
summary	bg	k	3.0037202677095323
summary	bg	mad	17.570404052734375
summary	bg	mean	58.76471710205078
summary	bg	median	54.81216049194336
summary	bg	n	2535516.0
summary	bg	p05	32.52068901062012
summary	bg	p95	99.92409706115723
summary	bg	stdv	21.38701629638672
summary	csf	k	-0.018471608850016086
summary	csf	mad	122.18669891357422
summary	csf	mean	307.7210388183594
summary	csf	median	298.57489013671875
summary	csf	n	20916.0
summary	csf	p05	138.71043395996094
summary	csf	p95	499.4286804199219
summary	csf	stdv	113.44043731689453
summary	gm	k	0.2024143651111867
summary	gm	mad	58.215213775634766
summary	gm	mean	636.7765502929688
summary	gm	median	634.4696655273438
summary	gm	n	43293.0
summary	gm	p05	541.99345703125
summary	gm	p95	739.4398681640625
summary	gm	stdv	59.77286148071289
summary	wm	k	0.9729014669592231
summary	wm	mad	51.54169464111328
summary	wm	mean	999.252685546875
summary	wm	median	1000.0083618164062
summary	wm	n	202632.0
summary	wm	p05	899.7598083496093
summary	wm	p95	1092.2673828125
summary	wm	stdv	58.224037170410156
tpm	overlap	csf	0.2121449112892151
tpm	overlap	gm	0.5294151306152344
tpm	overlap	wm	0.5407320857048035
wm2max			0.5948702410216332

Metadata

AcquisitionMatrixPE	256
ConversionSoftware	dcm2niix
ConversionSoftwareVersion	v1.0.20171017 (OpenJPEG build) GCC4.8.4
DeviceSerialNumber	0000000517353VH3
EchoTime	0.003828
FlipAngle	8
ImageOrientationPatientDICOM	[0, 1, 0, 0, 0, -1]
ImageType	['ORIGINAL', 'PRIMARY', 'OTHER']
InPlanePhaseEncodingDirectionDICOM	ROW
InstitutionName	Michigan_State_University
InversionTime	0.04
MRAcquisitionType	3D
MagneticFieldStrength	3
Manufacturer	GE
ManufacturersModelName	Signa_HDxt
Modality	MR
PatientPosition	HFS
PercentPhaseFOV	100
PixelBandwidth	162.734
ProtocolName	mprage_1mm_iso_20.83_bw
ReconMatrixPE	256
RepetitionTime	0.008596
SAR	0.306132
ScanOptions	NONE
ScanningSequence	RM
SequenceVariant	NONE
SeriesDescription	mprage_1mm_iso_20.83_bw
SliceThickness	1
SoftwareVersions	24_LX_MR_Software_release:HD16.0_V02_1131.a
SpacingBetweenSlices	1
StationName	MR03MR03

Provenance information

md5sum	0c1ca6640d792e8eb2d68d11c878fc16
software	mriqc
version	0.10.4

For details on the IQMs (image quality metrics) and further information on the enclosed plots, please read the documentation.