MRIQC: individual T1w report

Summary

Visual reports

Zoomed-in (brain mask)

Background noise

Extracted Image Quality Metrics (IQMs)

cjv0.3002607098263379
cnr4.24350230777127
efc0.611961906310506
fber78.53665161132812
fwhmavg4.146066666666667
fwhmx3.90371
fwhmy4.39761
fwhmz4.13688
icvscsf0.20536384961407023
icvsgm0.461455374698419
icvswm0.33318077568751076
inumed1.0123718976974487
inurange0.32248190641403185
qi10.0
qi20.0008942998312311452
rpvecsf21.631700025560953
rpvegm10.645753975292214
rpvewm16.82102509182126
sizex180
sizey256
sizez256
snrcsf2.6319340760429273
snrgm10.614555203544892
snrtotal10.140542546448044
snrwm17.17513835975631
snrdcsf11.13277027483673
snrdgm23.657063155692867
snrdtotal24.02550110577927
snrdwm37.28666988680821
spacingx1.0
spacingy1.0
spacingz1.0
summarybgk3.0037202677095323
summarybgmad17.570404052734375
summarybgmean58.76471710205078
summarybgmedian54.81216049194336
summarybgn2535516.0
summarybgp0532.52068901062012
summarybgp9599.92409706115723
summarybgstdv21.38701629638672
summarycsfk-0.018471608850016086
summarycsfmad122.18669891357422
summarycsfmean307.7210388183594
summarycsfmedian298.57489013671875
summarycsfn20916.0
summarycsfp05138.71043395996094
summarycsfp95499.4286804199219
summarycsfstdv113.44043731689453
summarygmk0.2024143651111867
summarygmmad58.215213775634766
summarygmmean636.7765502929688
summarygmmedian634.4696655273438
summarygmn43293.0
summarygmp05541.99345703125
summarygmp95739.4398681640625
summarygmstdv59.77286148071289
summarywmk0.9729014669592231
summarywmmad51.54169464111328
summarywmmean999.252685546875
summarywmmedian1000.0083618164062
summarywmn202632.0
summarywmp05899.7598083496093
summarywmp951092.2673828125
summarywmstdv58.224037170410156
tpmoverlapcsf0.2121449112892151
tpmoverlapgm0.5294151306152344
tpmoverlapwm0.5407320857048035
wm2max0.5948702410216332

Metadata

AcquisitionMatrixPE256
ConversionSoftwaredcm2niix
ConversionSoftwareVersionv1.0.20171017 (OpenJPEG build) GCC4.8.4
DeviceSerialNumber0000000517353VH3
EchoTime0.003828
FlipAngle8
ImageOrientationPatientDICOM[0, 1, 0, 0, 0, -1]
ImageType['ORIGINAL', 'PRIMARY', 'OTHER']
InPlanePhaseEncodingDirectionDICOMROW
InstitutionNameMichigan_State_University
InversionTime0.04
MRAcquisitionType3D
MagneticFieldStrength3
ManufacturerGE
ManufacturersModelNameSigna_HDxt
ModalityMR
PatientPositionHFS
PercentPhaseFOV100
PixelBandwidth162.734
ProtocolNamemprage_1mm_iso_20.83_bw
ReconMatrixPE256
RepetitionTime0.008596
SAR0.306132
ScanOptionsNONE
ScanningSequenceRM
SequenceVariantNONE
SeriesDescriptionmprage_1mm_iso_20.83_bw
SliceThickness1
SoftwareVersions24_LX_MR_Software_release:HD16.0_V02_1131.a
SpacingBetweenSlices1
StationNameMR03MR03

Provenance information

md5sum0c1ca6640d792e8eb2d68d11c878fc16
softwaremriqc
version0.10.4

For details on the IQMs (image quality metrics) and further information on the enclosed plots, please read the documentation.